PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g002100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 192aa    MW: 21622.7 Da    PI: 10.3569
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g002100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.17.2e-0678100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ C+k F r  nL+ H r H
  Csa06g002100.1  78 FICEVCNKGFQREQNLQLHRRGH 100
                     89*******************88 PP

2zf-C2H214.40.00011154176123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  Csa06g002100.1 154 WKCDKCSKRYAVQSDWKAHSKTC 176
                     58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.69E-877100No hitNo description
Gene3DG3DSA:3.30.160.601.5E-677100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.005278100IPR015880Zinc finger, C2H2-like
PfamPF121716.9E-678100IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9978100IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
SMARTSM00355110119149IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-5142175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.69E-8149174No hitNo description
SMARTSM00355140154174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAASSSSAAS FFGGRQDDQS HLLPPNSSAA APPPPPPHHQ PPLEAPPQKK KRNQPRTPNS  60
DAEVIALSPK TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS TKEVKRKVYL  120
CPEPSCVHHD PSRALGDLTG IKKHYYRKHG EKKWKCDKCS KRYAVQSDWK AHSKTCGTKE  180
YRCDCGTLFS R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6214950.0AJ621495.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 2 (idz2 gene).
GenBankAY0561740.0AY056174.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
GenBankBT0012150.0BT001215.1 Arabidopsis thaliana putative C2H2-type zinc finger protein (At2g02070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513965.11e-142PREDICTED: zinc finger protein JACKDAW-like
SwissprotQ9ZUL31e-110IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0D3E7J01e-124A0A0D3E7J0_BRAOL; Uncharacterized protein
STRINGBra040974.1-P1e-121(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-104indeterminate(ID)-domain 5